ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR395
source: miRBase, original name: osa-MIR395c (MI0001041)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGAAGTGTTTGGAGGAACTC miRNA* GTTCTCTTTAAGCACTTCATAC mismatches: 0 bulges: 1 |
pre-miRNA
GTATTATCAAGAGTTCTCTTTAAGCACTTCATACGACACCATTATTTATAGGGTTGTTGTGAAGTGTTTGGAGGAACTCTCGGTGTCAT
dot-bracket secondary structure
....((((.(((((((.((((((((((((((((((((.((..........)))))).))))))))))))))))))))))).))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
[2] Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L, Cell Res. 15:631-638(2005)., "Molecular evolution of the rice miR395 gene family"
GTATTATCAAGAGTTCTCTTTAAGCACTTCATACGACACCATTATTTATAGGGTTGTTGTGAAGTGTTTGGAGGAACTCTCGGTGTCAT
dot-bracket secondary structure
....((((.(((((((.((((((((((((((((((((.((..........)))))).))))))))))))))))))))))).))))....
SIMILARITIES| miRBase osa-MIR395o: 2e-26 PMRD osa-miR395c: 2e-45 microPC miR395: 0.000000000001 | UniProt no hits RFAM mir-395: 3e-44 |
Identical with: osa-miR395c from PMRD (MNEST048924) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
[2] Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L, Cell Res. 15:631-638(2005)., "Molecular evolution of the rice miR395 gene family"
