ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR396
source: miRBase, original name: osa-MIR396b (MI0001047)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTG miRNA* GTTCAATAAAGCTGTGGGAAA mismatches: 1 bulges: 0 |
pre-miRNA
CTTTGTGGTCTTCCACAGCTTTCTTGAACTGCATCTTTGAGAGAGATTAGCATCCCTATGTGTGGATTTTGCTTGCACGAGTGTGCAGTTCAATAAAGCT
GTGGGAAATTACAGAG
dot-bracket secondary structure
(((((((((.((((((((((((.((((((((((((((((((..(((((.((((......)))).)))))..))))...))).))))))))))).))))))
)))))).)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
CTTTGTGGTCTTCCACAGCTTTCTTGAACTGCATCTTTGAGAGAGATTAGCATCCCTATGTGTGGATTTTGCTTGCACGAGTGTGCAGTTCAATAAAGCT
GTGGGAAATTACAGAG
dot-bracket secondary structure
(((((((((.((((((((((((.((((((((((((((((((..(((((.((((......)))).)))))..))))...))).))))))))))).))))))
)))))).)))))))))
SIMILARITIES| miRBase zma-MIR396h: 0.00000000002 PMRD osa-miR396b: 2e-61 microPC miR396: 0.00000002 | UniProt no hits RFAM MIR396: 3e-60 |
Identical with: osa-miR396b from PMRD (MNEST048946) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
