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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042029
species: Oryza sativa
miRNA family: MIR396
source: miRBase, original name: osa-MIR396d (MI0001702)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCCACAGGCTTTCTTGAACTG

miRNA*
 GAAAAGAAAGCTGAATTGTCGA

mismatches: 9
bulges: 2
View larger
pre-miRNA
 AAAGATGTGCGGGCATGCTTTCCACAGGCTTTCTTGAACTGTGAACTCGTGGGGGTGTATGTGCTCATGTTGGGATTGTGGTCGGTGGCCTCCAATTCTC
TGAAAAGAAAGCTGAATTGTCGAGCTCCCCGTTCTGTCTTTG

dot-bracket secondary structure
((((((..(((((...((((..((..(((((((((.....(.(((....(((((((...((.((.((((.......))))))))...))))))).))).)
....)))))))))....))..))))..)))))...)))))).


SIMILARITIES
miRBase osa-MIR396e: 4e-72

PMRD osa-miR396d: 7e-77

microPC miR396: 0.0000000001		UniProt no hits

RFAM MIR396: 1e-69

Identical with: osa-miR396d from PMRD (MNEST048948)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence

references
[1] Sunkar R, Girke T, Jain PK, Zhu JK, Plant Cell. 17:1397-1411(2005)., "Cloning and characterization of microRNAs from rice"



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