miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST004203
species: Oryza sativa
miRNA family: MIRf34
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AATGTGGGAAATGCTAGAATG

miRNA*
TTTTAGCATTTTCCACATTCA

mismatches: 0
bulges: 0

View larger
pre-miRNA
GGCTAACTACATACTTCCTCCATTTCACAATGTAAGTCATTTTAGCATTTTCCACATTCATATTGATGTTAATGAATCTAGATAGATATATATGTCTAGA
TTCATTAACTTCAATATGAATGTGGGAAATGCTAGAATGACTTAAATTGTGAAATGGAGGGAGTACAGTTTAATA


dot-bracket secondary structure
....((((...((((((((((((((((((((.((((((((((((((((((((((((((((((((((.(((((((((((((((((........))))))))
))))))))).)))))))))))))))))))))))))))))))))).)))))))))))))))))))).)))).....



SIMILARITIES
miRBase osa-MIR808: 2e-68

PMRD osa-miR808: 2e-68

microPC miR809: 2e-28
UniProt no hits

RFAM MIR1122: 1e-63
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;