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Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Curcuma longa
,
Cynodon dactylon
,
Elaeis guineensis
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Musa ABB Group
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Zingiber officinale
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST042032
species:
Oryza sativa
miRNA family:
MIR396
source:
miRBase, original name:
osa-MIR396f
(
MI0010563
)
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCTCCACAGGCTTTCTTGAACT
miRNA*
TTCAAGAAAGTCCTTGGAAAAC
mismatches:
4
bulges:
0
View larger
pre-miRNA
GCCATGC
TCTCCACAGGCTTTCTTGAACT
GTGAACTCGTGTGTGCATGCTCCTCATATATTGTTCTAGATCCCATGCATGATGCATATCGATCGATCTGA
TCTGAATTAGGTCATCGATGCGCATCTGGATCCCCATCTTGTTGATAG
TTCAAGAAAGTCCTTGGAAAAC
ATGGTG
dot-bracket secondary structure
((((((.
..((((..((((((((((((((
((.(((..(((((((.........))))))).......(((((.......(((((.(((((((.(((((((
(....))))))))))))))).))))).)))))........))).))))
))))))))))))..))))...)
))))).
SIMILARITIES
miRBase
osa-MIR396f
:
4e-97
PMRD
osa-miR396f
:
4e-97
microPC
miR396
:
1e-85
UniProt
no hits
RFAM
MIR396: 8e-96
Identical with:
miR396
from microPC (
MNEST046774
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
references
[
1
] Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y,
Plant Cell. 21:3421-3435(2009).
,
"Rice MicroRNA effector complexes and targets"
[
2
] Xue LJ, Zhang JJ, Xue HW,
Nucleic Acids Res. 37:916-930(2009).
,
"Characterization and expression profiles of miRNAs in rice seeds"