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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST042040
species: Oryza sativa
miRNA family: MIR398
source: miRBase, original name: osa-MIR398b (MI0001052)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTCTCAGGTCGCCCCTG

miRNA*
 GGGGCGAGCTGGGAACACACG

mismatches: 1
bulges: 0
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pre-miRNA
 GGAGTTCCTACAGGGGCGAGCTGGGAACACACGGTGATGAGGCGGTCTGGTCTTTCGTGTGTTCTCAGGTCGCCCCTGCCGGGACTCT

dot-bracket secondary structure
((((((((..(((((((((.((((((((((((((.(((.((.....)).)))..)))))))))))))).)))))))))..))))))))


SIMILARITIES
miRBase rco-MIR398b: 0.000000001

PMRD osa-miR398b: 7e-45

microPC miR398: 6e-33		UniProt no hits

RFAM MIR398: 1e-43

Identical with: osa-miR398b from PMRD (MNEST048963)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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deep sequencing data evidence

references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"



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