ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR398
source: miRBase, original name: osa-MIR398b (MI0001052)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCTG miRNA* GGGGCGAGCTGGGAACACACG mismatches: 1 bulges: 0 |
pre-miRNA
GGAGTTCCTACAGGGGCGAGCTGGGAACACACGGTGATGAGGCGGTCTGGTCTTTCGTGTGTTCTCAGGTCGCCCCTGCCGGGACTCT
dot-bracket secondary structure
((((((((..(((((((((.((((((((((((((.(((.((.....)).)))..)))))))))))))).)))))))))..))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
GGAGTTCCTACAGGGGCGAGCTGGGAACACACGGTGATGAGGCGGTCTGGTCTTTCGTGTGTTCTCAGGTCGCCCCTGCCGGGACTCT
dot-bracket secondary structure
((((((((..(((((((((.((((((((((((((.(((.((.....)).)))..)))))))))))))).)))))))))..))))))))
SIMILARITIES| miRBase rco-MIR398b: 0.000000001 PMRD osa-miR398b: 7e-45 microPC miR398: 6e-33 | UniProt no hits RFAM MIR398: 1e-43 |
Identical with: osa-miR398b from PMRD (MNEST048963) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
