ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR444
source: miRBase, original name: osa-MIR444d (MI0006976)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAGTTGCTGCCTCAAGCTT miRNA* GCATGAGGCAACAACTGCATT mismatches: 2 bulges: 0 |
pre-miRNA
AGTTATTGCACATGGTGGCACCAAGCATGAGGCAACAACTGCATTACTTGCAAGAAAGGCACAAAATCATTAGATGATTACTTGTGGCTTTCTTGCAAGT
TGTGCAGTTGCTGCCTCAAGCTTGCTGCCTCCCTCTGCCAAAT
dot-bracket secondary structure
.......(((...((.((((.(((((.(((((((.(((((((((.(((((((((((((.(((((((((((...))))))..))))).)))))))))))))
.))))))))).))))))).))))).)))).))...))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: MPSS, Northern
references
[1] Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ, Proc Natl Acad Sci U S A. 105:4951-4956(2008)., "Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)"
[2] Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK, BMC Plant Biol. 8:25(2008)., "Identification of novel and candidate miRNAs in rice by high throughput sequencing"
[3] Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ, Genome Res. 18:571-584(2008)., "Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa"
AGTTATTGCACATGGTGGCACCAAGCATGAGGCAACAACTGCATTACTTGCAAGAAAGGCACAAAATCATTAGATGATTACTTGTGGCTTTCTTGCAAGT
TGTGCAGTTGCTGCCTCAAGCTTGCTGCCTCCCTCTGCCAAAT
dot-bracket secondary structure
.......(((...((.((((.(((((.(((((((.(((((((((.(((((((((((((.(((((((((((...))))))..))))).)))))))))))))
.))))))))).))))))).))))).)))).))...))).....
SIMILARITIES| miRBase osa-MIR444d: 2e-77 PMRD tae-miR444: 9e-24 microPC miR444: 2e-58 | UniProt sp|Q6Z6W2|MAD57_ORYSJ: 0.00004 RFAM MIR444: 7e-28 |
Identical with: miR444 from microPC (MNEST045665) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: MPSS, Northern
references
[1] Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ, Proc Natl Acad Sci U S A. 105:4951-4956(2008)., "Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)"
[2] Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK, BMC Plant Biol. 8:25(2008)., "Identification of novel and candidate miRNAs in rice by high throughput sequencing"
[3] Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ, Genome Res. 18:571-584(2008)., "Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa"
