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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST042093
species:
Oryza sativa
miRNA family:
MIR445
source:
miRBase, original name:
osa-MIR445b
(
MI0001710
)
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TAAATTAGTGTATAAACATCCGAT
miRNA*
CGAATGTTTGACGCTAATTTAGA
mismatches:
1
bulges:
1
View larger
pre-miRNA
GTCCGTGTCACAT
CGAATGTTTGACGCTAATTTAGA
GTATTAAACATAGACTAATAAAAAACTAATTTCATAAATGAAAGCTAATCTGCGAGACGAACTT
TTTAAGCCTAATTAATCCATAATTATGAAAAGTTTACTAATCATGGTGTAATTAGACTCAAAAGATTCGTCTCGCGAATTAGTCCAAGGTTATAGAATAG
GTTTTATAATTAATGTATGTTTAATACTC
TAAATTAGTGTATAAACATCCGAT
GTGACAGGGAC
dot-bracket secondary structure
((((.((((((((
((.((((((((((((((((((((
((((((((((((.(.((((..((((((.(((..((((......((((((.(((((((((((.((
(((.((.(((((((..((((.(((((((.....))).)))).))))..))))))).)).))))).))))))))))).))))))......))))..))).)
)))))...)))).).))))))))))))))
))))))))))).))))))).))))
)))))).))))
SIMILARITIES
miRBase
osa-MIR445e
:
5e-138
PMRD
osa-miR445b
:
2e-149
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
osa-miR445b
from PMRD (
MNEST049009
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
cloned
references
[
1
] Sunkar R, Girke T, Jain PK, Zhu JK,
Plant Cell. 17:1397-1411(2005).
,
"Cloning and characterization of microRNAs from rice"