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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST042097
species:
Oryza sativa
miRNA family:
MIR445
source:
miRBase, original name:
osa-MIR445f
(
MI0001714
)
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TAAATTAGTGTATAAACATCCGAT
miRNA*
CGAATGTTTGACGCTAATTTGGA
mismatches:
1
bulges:
1
View larger
pre-miRNA
AGATGGGGCTAAAACTTTTTAGTCCGTGTCACAT
CGAATGTTTGACGCTAATTTGGA
GTATTAAACATAGACTAATAAAAAAACTAATTTCATAAATGAA
AGCTAATCTGCGGGACGAATTTTTTAAGCCTAATTAATCCATAATTATGAAAAGTTTACTAATCATGGTGTAATTAGACTCAAAAGATTCGTCTCGCGAA
TTAGTCCAAGGTTATAGAATAGGTTTTATAATTAGTGTATGTTTAATACTC
TAAATTAGTGTATAAACATCCGAT
GTGACAGGGACTTAAAATAAGTCCC
TGTTT
dot-bracket secondary structure
....((((((.....((((.(((((.((((((((
((.((((((((((((((((((((
((((((((((((.((((((.(.((((((.(((..((((.....
.((((((.(((((((((((((((((.((.(((((((..((((.(((((((.....))).)))).))))..))))))).)).))))))))))))))))).)
)))))......))))..))).)))))).).)))))).))))))))))))))
))))))))))).))))))).))))
)))))).))))).))))..))))))
.....
SIMILARITIES
miRBase
osa-MIR445h
:
2e-137
PMRD
osa-miR445f
:
3e-161
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
cloned
references
[
1
] Sunkar R, Girke T, Jain PK, Zhu JK,
Plant Cell. 17:1397-1411(2005).
,
"Cloning and characterization of microRNAs from rice"