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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Citrus aurantium
,
Citrus reticulata
,
Citrus sinensis
,
Citrus unshiu
,
Eucalyptus globulus
,
Eucalyptus gunnii
,
Gossypium arboreum
,
Gossypium hirsutum
,
Gossypium raimondii
,
Limnanthes alba
,
Paullinia cupana var. sorbilis
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Theobroma cacao
,
Tropaeolum majus
,
Carica papaya
,
Citrus clementina
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST000421
species:
Citrus sinensis
miRNA family:
miR172a
source:
miRNEST
Taxonomy by NCBI:
Citrus sinensis
Citrus
Rutaceae
Sapindales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GCAGCGTCCTCAAGATTCACA
miRNA*
AGAATCTTGATGATGCTGCAA
mismatches:
4
bulges:
0
View larger
pre-miRNA
ACCTTAAAACAGTCGTTGCTCGCTGTA
GCAGCGTCCTCAAGATTCACA
TCCAGTCTAAAGGCAAAAGCAGCAATTTTTCTTCTTTTTTGCTTGCCTTGGT
TTTTGTGAGGG
AGAATCTTGATGATGCTGCAA
CGGCGATTAATGACTAGCTACCAA
dot-bracket secondary structure
..........((((((((.(((((((.
((((((((.(((((((((...
(((((.((((.((((..(((((.((..........)).))))))))))))).
..))).))...
.))))))))).)))))))).)
)))))).)))))))).........
SIMILARITIES
miRBase
csi-MIR172a
:
1e-35
PMRD
ath-miR172d
:
0.000002
microPC
miR172
:
1e-19
UniProt
no hits
RFAM
mir-172: 0.00004
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record