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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST042102
species:
Oryza sativa
miRNA family:
MIR528
source:
miRBase, original name:
osa-MIR528
(
MI0003201
)
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGAAGGGGCATGCAGAGGAG
miRNA*
CCTGTGCTTGCCTCTTCCATT
mismatches:
2
bulges:
0
View larger
pre-miRNA
AG
TGGAAGGGGCATGCAGAGGAG
CAGGAGATTCAGTTTGAAGCTGGACTTCACTTTTGCCTCTCTCT
CCTGTGCTTGCCTCTTCCATT
dot-bracket secondary structure
((
(((((((((((.(((.(((((
..(((((..(((..(((((.....)))))...)))..)))))))
))).))).)))))))))))))
SIMILARITIES
miRBase
bdi-MIR528
:
0.00000007
PMRD
osa-miR528
:
7e-45
microPC
miR528
:
2e-42
UniProt
no hits
RFAM
no hits
Identical with:
osa-miR528
from PMRD (
MNEST049018
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Northern
deep sequencing data evidence
references
[
1
] Liu B, Li P, Li X, Liu C, Cao S, Chu C, Cao X,
Plant Physiol. 139:296-305(2005).
,
"Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice"