ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR529
source: miRBase, original name: osa-MIR529a (MI0003202)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGTACCCTCTCTCTTCTTC miRNA* AGAAGAGAGAGAGTACAGCC mismatches: 1 bulges: 0 |
pre-miRNA
GAAGAAGAGAGAGAGTACAGCCTTAGTTCAGATCACATATGACTATCTTTTGCGAGTCTGATCGATACTCTGATGAAGGCTGTACCCTCTCTCTTCTTC
dot-bracket secondary structure
(((((((((((((.((((((((((...(((((........((((..(....)..))))..........)))))..)))))))))).)))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Liu B, Li P, Li X, Liu C, Cao S, Chu C, Cao X, Plant Physiol. 139:296-305(2005)., "Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice"
GAAGAAGAGAGAGAGTACAGCCTTAGTTCAGATCACATATGACTATCTTTTGCGAGTCTGATCGATACTCTGATGAAGGCTGTACCCTCTCTCTTCTTC
dot-bracket secondary structure
(((((((((((((.((((((((((...(((((........((((..(....)..))))..........)))))..)))))))))).)))))))))))))
SIMILARITIES| miRBase zma-MIR529: 0.000000001 PMRD osa-miR529a: 2e-51 microPC no hits | UniProt no hits RFAM MIR529: 4e-50 |
Identical with: osa-miR529a from PMRD (MNEST049019) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Liu B, Li P, Li X, Liu C, Cao S, Chu C, Cao X, Plant Physiol. 139:296-305(2005)., "Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice"
