miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042188
species: Oryza sativa
miRNA family: MIR827
source: miRBase, original name: osa-MIR827b (MI0010568)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTAGATGACCATCAGCAAACA

miRNA*
 TTTTGTTGCTGGTCATCTAGCT

mismatches: 1
bulges: 1
View larger
pre-miRNA
 CCATGAACCTGTTTTGTTGCTGGTCATCTAGCTACCCGTGCATGCCTGGAGATTGGAGAATAATTGACGATGCAGCAGTCGGCTTATTGGCTCTTGGGCA
CGCGTGGTTAGATGACCATCAGCAAACAAGTTCGTGAG

dot-bracket secondary structure
.(((((((.(((((.((((.(((((((((((((((.(((((...((.((((....(((.........((((......)))).))).....)))).)))))
)).))))))))))))))).))))))))).)))))))..


SIMILARITIES
miRBase osa-MIR827a: 5e-62

PMRD osa-miR827b: 2e-74

microPC miR827: 0.000007		UniProt no hits

RFAM no hits

Identical with: osa-miRf10281-akr from PMRD (MNEST049496)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence

references
[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"



Liczniki na strone;