miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST042210
species: Oryza sativa
miRNA family: MIR1428
source: miRBase, original name: osa-MIR1428f (MI0010548)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AATTCACAGGCCCTATCTTGTG

miRNA*
 TAAGATAATGCCGTGAATTCG

mismatches: 2
bulges: 1
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pre-miRNA
 TGCTTTGCGAATTCACAGGCCCTATCTTGTGGTATGAACTAAGTACGCGATGATTTCTGGTACGTATTGGGGGCTTACCATAAGATAATGCCGTGAATTC
GTAAAGCGT

dot-bracket secondary structure
.(((((((((((((((.(((..((((((((((((.(..((.((((((....(....).....)))))).))..).))))))))))))..)))))))))))
)))))))..


SIMILARITIES
miRBase osa-MIR1428d: 1e-37

PMRD osa-miR1428f: 3e-57

microPC miR1428: 1e-25		UniProt no hits

RFAM MIR1428: 3e-29

Identical with: osa-miR1428f from PMRD (MNEST049113)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence

references
[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"



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