ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR1428
source: miRBase, original name: osa-MIR1428g (MI0010549)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AATTCACAGGCCCTATCTTGTG miRNA* AAAGATAATGCTGTGAATTTG mismatches: 3 bulges: 1 |
pre-miRNA
CGCTTTGCGAATTCACAGGCCCTATCTTGTGGTATGAACTGAGTACGCGATGATTTATGGCGCATATTGGGGGCTTACCAAAAGATAATGCTGTGAATTT
GCAAAGCGC
dot-bracket secondary structure
((((((((((((((((((.(..((((((.(((((.(..((.(((((((.(((...))).)))..)))).))..).))))).))))))..)))))))))))
)))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
CGCTTTGCGAATTCACAGGCCCTATCTTGTGGTATGAACTGAGTACGCGATGATTTATGGCGCATATTGGGGGCTTACCAAAAGATAATGCTGTGAATTT
GCAAAGCGC
dot-bracket secondary structure
((((((((((((((((((.(..((((((.(((((.(..((.(((((((.(((...))).)))..)))).))..).))))).))))))..)))))))))))
)))))))).
SIMILARITIES| miRBase osa-MIR1428d: 5e-40 PMRD osa-miR1428g: 3e-57 microPC miR1428: 2e-24 | UniProt no hits RFAM MIR1428: 1e-31 |
Identical with: osa-miR1428g from PMRD (MNEST049114) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
