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Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST042288
species: Oryza sativa
miRNA family: MIR2118
source: miRBase, original name: osa-MIR1869 (MI0008272)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGAACAATAGGCATGGGAGGTA

miRNA*
GTTCCCATGCCTAATGCTCTTAGG

mismatches: 5
bulges: 0

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pre-miRNA
AAGGAACACCTGAGAACAATAGGCATGGGAGGTATTGGGAAAACACAGGAACATATTGTGACCCCTAATTTTAAAGGGAAATAATGGTTGAGGCTTTCCT
CCATGTTCCCATGCCTAATGCTCTTAGGTGCTCTTTTT


dot-bracket secondary structure
(((((.(((((((((.((.((((((((((((.....((((((.(.....(((.((((((...((((........))))..)))))))))...).))))))
.....)))))))))))).)).))))))))).)))))..



SIMILARITIES
miRBase osa-MIR2118p: 0.000000007

PMRD osa-miR1869: 2e-74

microPC no hits
UniProt no hits

RFAM MIR2118: 3e-73

Identical with: osa-miR1869 from PMRD (MNEST049164)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"




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