ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR2118
source: miRBase, original name: osa-MIR1869 (MI0008272)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGAACAATAGGCATGGGAGGTA miRNA* GTTCCCATGCCTAATGCTCTTAGG mismatches: 5 bulges: 0 |
pre-miRNA
AAGGAACACCTGAGAACAATAGGCATGGGAGGTATTGGGAAAACACAGGAACATATTGTGACCCCTAATTTTAAAGGGAAATAATGGTTGAGGCTTTCCT
CCATGTTCCCATGCCTAATGCTCTTAGGTGCTCTTTTT
dot-bracket secondary structure
(((((.(((((((((.((.((((((((((((.....((((((.(.....(((.((((((...((((........))))..)))))))))...).))))))
.....)))))))))))).)).))))))))).)))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
AAGGAACACCTGAGAACAATAGGCATGGGAGGTATTGGGAAAACACAGGAACATATTGTGACCCCTAATTTTAAAGGGAAATAATGGTTGAGGCTTTCCT
CCATGTTCCCATGCCTAATGCTCTTAGGTGCTCTTTTT
dot-bracket secondary structure
(((((.(((((((((.((.((((((((((((.....((((((.(.....(((.((((((...((((........))))..)))))))))...).))))))
.....)))))))))))).)).))))))))).)))))..
SIMILARITIES| miRBase osa-MIR2118p: 0.000000007 PMRD osa-miR1869: 2e-74 microPC no hits | UniProt no hits RFAM MIR2118: 3e-73 |
Identical with: osa-miR1869 from PMRD (MNEST049164) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
