ABOUT THIS RECORDspecies: Oryza sativa
source: miRBase, original name: osa-MIR1880 (MI0008286)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCAAGCGGGCCACTTAAGCATT miRNA* CGCTTAAGTGGTCCGCCTGGATAA mismatches: 4 bulges: 0 |
pre-miRNA
GTTCCGCTTGTGAAAATCGATTTTTCCAAGCGGGCCACTTAAGCATTCCGCCTGTAAAATTAAAGGTATTTTCGCAGCCGGATCGCTTAAGTGGTCCGCC
TGGATAAATCGATTTTCGTAGGCGGATGA
dot-bracket secondary structure
..(((((((((((((((((((((.((((.(((((((((((((((..((((.(((((((((.......))))).)))).))))..))))))))))))))).
)))).)))))))))))))))))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
GTTCCGCTTGTGAAAATCGATTTTTCCAAGCGGGCCACTTAAGCATTCCGCCTGTAAAATTAAAGGTATTTTCGCAGCCGGATCGCTTAAGTGGTCCGCC
TGGATAAATCGATTTTCGTAGGCGGATGA
dot-bracket secondary structure
..(((((((((((((((((((((.((((.(((((((((((((((..((((.(((((((((.......))))).)))).))))..))))))))))))))).
)))).)))))))))))))))))))))...
SIMILARITIES| miRBase no hits PMRD osa-miR1880: 3e-69 microPC no hits | UniProt no hits RFAM no hits |
Identical with: osa-miR1880 from PMRD (MNEST049177) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"
