miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042309
species: Oryza sativa
miRNA family: MIR1882
source: miRBase, original name: osa-MIR1882g (MI0008294)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGATTGCTTTCAAGGTCATTTCTT

miRNA*
 GAAATGATCTTGGACGCAATCTAG

mismatches: 2
bulges: 0
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pre-miRNA
 TTTATCGTTACCAACATCCTAGATTGCTTTCAAGGTCATTTCTTTATGGACCCCATTCCCATAAATTCAGTATCCAAAGATGGTTGCTGTATCTATGGGA
ATAAGGGTTCCATAACGAAATGATCTTGGACGCAATCTAGGAGTTTGCTGATGATAAC

dot-bracket secondary structure
.(((((((((.(((..(((((((((((.((((((((((((((.(((((((.((((((((((((.((.(((((.(((....))).))))).)).)))))))
))..))).))))))).)))))))))))))).)))))))))))..))).))))))))).


SIMILARITIES
miRBase osa-MIR1882b: 5e-72

PMRD osa-miR1882g: 2e-86

microPC no hits		UniProt no hits

RFAM no hits

Identical with: osa-miR1882g from PMRD (MNEST049185)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references
[1] Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"



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