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Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Curcuma longa
,
Cynodon dactylon
,
Elaeis guineensis
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Musa ABB Group
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Zingiber officinale
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST042379
species:
Oryza sativa
source:
miRBase, original name:
osa-MIR2125
(
MI0010723
)
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTTTCTCTATAGACTATCTCCAG
miRNA*
TGAGATAGTCTATAGAGAAAAA
mismatches:
2
bulges:
0
View larger
pre-miRNA
TTTTTCTCTATAGACTATCTCCAG
GTTAATAGATAGCTTTGCTCTCTCTCTTCATTTAATCTCTTCCAAGTAGGAAAATATGCTGACATGGATCTCTTGT
AGAGAGTCTATAGATAACCATTGCAGGTGCCCTTATGCTTCCGTTGTTTGGAAATCAAGGTGACTACGTCATTCGTTTCCATCGCTTGATTAGGGCACCC
ACAATGGTTATCTGTAGGCTCTCTACAAAAGATCCATGTCAGCATATTTTTCTACTTGGAAGAGATTAAATGAAGAGAGAGAGCAAAGCTATCTACTAAT
TT
TGAGATAGTCTATAGAGAAAAA
dot-bracket secondary structure
.((((((((((((((((((((.((
((((.((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.((((
(((((((((((((((((((((((..((((((((....(...((.....(((((((...((((((...)))))).))))))).))...)...)))))))).
.))))))))))))))))))))))))))).)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).))))
))
.)))))))))))))))))))).
SIMILARITIES
miRBase
no hits
PMRD
osa-miRf10511-akr
:
4e-68
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
osa-miRf10513-akr
from PMRD (
MNEST049728
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
cloned
references
[
1
] Huang SQ, Peng J, Qiu CX, Yang ZM,
J Inorg Biochem. 103:282-287(2009).
,
"Heavy metal-regulated new microRNAs from rice"