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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST004240
species: Oryza sativa
miRNA family: MIR1439
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTTGGGACGGAGGGAGTACT

miRNA*
 TACTCCCTCCGTCCCAAAAAC

mismatches: 2
bulges: 0
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pre-miRNA
 AATTTTCCAAATAATAGGTACAGGGGGAGATACTCCCTCCGTCCCAAAAACACATACATCAACCTGGAGATCAACCTAGGAGAGATCACATCCCCTCTTA
ATTCTTATCCCCTCTTAATTCTTTTTGGGACGGAGGGAGTACTGTTGAAGAAGTCCGATGACATTTTTTC

dot-bracket secondary structure
..((((((...((.....))...)))))).((((((((((((((((((((...............(((........((((((.(((...)))..))))))
.......)))...........)))))))))))))))))))).....(((((.(((....))).)))))..


SIMILARITIES
miRBase tae-MIR1122: 0.0001

PMRD osa-miRf11019-akr: 0.000009

microPC miR1439: 2e-59		UniProt no hits

RFAM MIR1122: 0.0000006		most similar mature miRNAs

Identical with: miR1439 from microPC (MNEST046324)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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