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Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST004240
species: Oryza sativa
miRNA family: MIR1439
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTTGGGACGGAGGGAGTACT

miRNA*
 TACTCCCTCCGTCCCAAAAAC

mismatches: 2
bulges: 0
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pre-miRNA
 AATTTTCCAAATAATAGGTACAGGGGGAGATACTCCCTCCGTCCCAAAAACACATACATCAACCTGGAGATCAACCTAGGAGAGATCACATCCCCTCTTA
ATTCTTATCCCCTCTTAATTCTTTTTGGGACGGAGGGAGTACTGTTGAAGAAGTCCGATGACATTTTTTC

dot-bracket secondary structure
..((((((...((.....))...)))))).((((((((((((((((((((...............(((........((((((.(((...)))..))))))
.......)))...........)))))))))))))))))))).....(((((.(((....))).)))))..


SIMILARITIES
miRBase tae-MIR1122: 0.0001

PMRD osa-miRf11019-akr: 0.000009

microPC miR1439: 2e-59		UniProt no hits

RFAM MIR1122: 0.0000006		most similar mature miRNAs

Identical with: miR1439 from microPC (MNEST046324)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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