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Species belonging to selected taxon:

Sorghum propinquum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042495
species: Sorghum bicolor
miRNA family: MIR159
source: miRBase, original name: sbi-MIR159b (MI0001851)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTTGGATTGAAGGGAGCTCCT

miRNA*
 GATGAAGAAGGCGAAGAAAAGCGAACAAAGAGCTCCCTTCGATCCAATCC

mismatches: 2
bulges: 0
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pre-miRNA
 TGAATGAAGATATGAAGAAGAAGACGACGACGATGAAGAAGGCGAAGAAAAGCGAACAAAGAGCTCCCTTCGATCCAATCCAGGAGGGGAAGTGGTCGGT
TGCAGCTGCCGGTTCATGGATGCCTCTCTGGTGCAGCAATGACTGATGCTCACCTGCACTTGCATGGGTGTGCATGACCCGGGAGATGAACCCACCATCA
TCTTTCCCTCGTGCTTGGATTGAAGGGAGCTCCTCTCTCTTTCTCTCTTTCTC

dot-bracket secondary structure
.......(((...((.((..((((.((.((...........((........)).......((((((((((((((((((..((.(((((((((((((.(((
(.((.((.((((.(((((.((((((....(((((((...((((....).))).))))))).....)))))).))))).)))).)).)))))).))))...
.))))))))).)).)))))))))))))))))).))))))))..))))..))).


SIMILARITIES
miRBase sof-MIR159c: 6e-91

PMRD sbi-miR159b: 2e-93

microPC miR159: 6e-91		UniProt no hits

RFAM MIR159: 5e-92

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"



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