ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR164
source: miRBase, original name: sbi-MIR164c (MI0001852)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGACACGTGAG miRNA* CATGTGTCCGTCCTCTCCACC mismatches: 4 bulges: 0 |
pre-miRNA
TATGGTGTGTTTGTGCAGGGTGGAGAAGCAGGACACGTGAGCGACCATCCAGTTTCCATCGCTGGCTCTCCGCTGCGGGCGCTGCCGTGCGTTGGATCGT
CGTTGGGTGGTCGCTCATGTGTCCGTCCTCTCCACCGAGCACCGGTACATCCG
dot-bracket secondary structure
...(((((((..((((..((((((((....((((((((((((((((((((((..((((.(((((((....(((.....)))..)))).))).))))....
..))))))))))))))))))))))....))))))))..))))..)))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
TATGGTGTGTTTGTGCAGGGTGGAGAAGCAGGACACGTGAGCGACCATCCAGTTTCCATCGCTGGCTCTCCGCTGCGGGCGCTGCCGTGCGTTGGATCGT
CGTTGGGTGGTCGCTCATGTGTCCGTCCTCTCCACCGAGCACCGGTACATCCG
dot-bracket secondary structure
...(((((((..((((..((((((((....((((((((((((((((((((((..((((.(((((((....(((.....)))..)))).))).))))....
..))))))))))))))))))))))....))))))))..))))..)))))))..
SIMILARITIES| miRBase zma-MIR164e: 0.0000000000005 PMRD sbi-miR164c: 2e-83 microPC no hits | UniProt no hits RFAM MIR164: 8e-71 |
Identical with: sbi-miR164c from PMRD (MNEST054412) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
