ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR166
source: miRBase, original name: sbi-MIR166f (MI0001569)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCTC miRNA* GGAATGTTGGCTGGCTCGAGG mismatches: 5 bulges: 0 |
pre-miRNA
GCCTTGGTCATGGGGGTTTGTGGGGAATGTTGGCTGGCTCGAGGCATCCGCGTCCTGGCTTGCAGATCGTTTTGCCTGCTACCGGAAAGATCGAGAGGCGT
CGGACCAGGCTTCATTCCTCGCAAACCGGTGCATCCATG
dot-bracket secondary structure
).......(((((((((((((((((((((..(.((((..(((.((.((((..(((((((..(((((....)))))..))))..))).....)).)).)).)
))..)))).)..)))))))))))))))......))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
GCCTTGGTCATGGGGGTTTGTGGGGAATGTTGGCTGGCTCGAGGCATCCGCGTCCTGGCTTGCAGATCGTTTTGCCTGCTACCGGAAAGATCGAGAGGCGT
CGGACCAGGCTTCATTCCTCGCAAACCGGTGCATCCATG
dot-bracket secondary structure
).......(((((((((((((((((((((..(.((((..(((.((.((((..(((((((..(((((....)))))..))))..))).....)).)).)).)
))..)))).)..)))))))))))))))......))))))
SIMILARITIES| miRBase zma-MIR166m: 2.0E-34 PMRD sbi-miR166f: 4.0E-75 microPC miR166: 2.0E-6 | UniProt no hits RFAM 6mir-166: 2.0E-56 |
Identical with: sbi-miR166f from PMRD (MNEST054421) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
