ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR166
source: miRBase, original name: sbi-MIR166g (MI0001853)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCAATCCCT miRNA* GGATTGTTGTCTGGCTCGGGG mismatches: 5 bulges: 0 |
pre-miRNA
TCATGCTCGGATTAGGTTAGGGGGATTGTTGTCTGGCTCGGGGTCTCCGGTCGAGAATCCTTGGCCTTGCCGGAGTTGTCGTTGACCGGAGATTTCGGAC
CAGGCTTCAATCCCTTTAACCATGCGGCATTTAG
dot-bracket secondary structure
..((((.((.((..((((((((((((((..((((((..((..((((((((((((((.(((..(((...))))))....)).))))))))))))..))..)
)))))..)))))))))))))))).))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
TCATGCTCGGATTAGGTTAGGGGGATTGTTGTCTGGCTCGGGGTCTCCGGTCGAGAATCCTTGGCCTTGCCGGAGTTGTCGTTGACCGGAGATTTCGGAC
CAGGCTTCAATCCCTTTAACCATGCGGCATTTAG
dot-bracket secondary structure
..((((.((.((..((((((((((((((..((((((..((..((((((((((((((.(((..(((...))))))....)).))))))))))))..))..)
)))))..)))))))))))))))).))))))....
SIMILARITIES| miRBase zma-MIR166k: 2e-21 PMRD sbi-miR166g: 4e-72 microPC miR166: 0.0001 | UniProt no hits RFAM mir-166: 1e-53 |
Identical with: sbi-miR166g from PMRD (MNEST054422) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
