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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042531
species: Sorghum bicolor
miRNA family: MIR169
source: miRBase, original name: sbi-MIR169c (MI0001557)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAGCCAAGGATGACTTGCCTA

miRNA*
 GGCGGTCACCTTGGCTAGCC

mismatches: 0
bulges: 3
View larger
pre-miRNA
 TGGCGAGAGCCTGCCTTTGGTAGCCAAGGATGACTTGCCTACACGGCCTTGCGAGTTCCGGTTGCATGGCCAGTTCAGTTGGGTTTGTGGGCGGTCACCT
TGGCTAGCCTGAGTGGCTCTTGCCTG

dot-bracket secondary structure
.((((((((((...(((.(((((((((((.(((((.(((((((.((((.(((((.......))))).)))).(..(....)..).)))))))))))))))
))))).))).))).))))))))))..


SIMILARITIES
miRBase sbi-MIR169d: 4e-44

PMRD sbi-miR169c: 2e-67

microPC miR169: 0.000006		UniProt no hits

RFAM MIR169_5: 4e-66

Identical with: sbi-miR169c from PMRD (MNEST054439)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"



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