ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR169
source: miRBase, original name: sbi-MIR169c (MI0001557)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTA miRNA* GGCGGTCACCTTGGCTAGCC mismatches: 0 bulges: 3 |
pre-miRNA
TGGCGAGAGCCTGCCTTTGGTAGCCAAGGATGACTTGCCTACACGGCCTTGCGAGTTCCGGTTGCATGGCCAGTTCAGTTGGGTTTGTGGGCGGTCACCT
TGGCTAGCCTGAGTGGCTCTTGCCTG
dot-bracket secondary structure
.((((((((((...(((.(((((((((((.(((((.(((((((.((((.(((((.......))))).)))).(..(....)..).)))))))))))))))
))))).))).))).))))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
TGGCGAGAGCCTGCCTTTGGTAGCCAAGGATGACTTGCCTACACGGCCTTGCGAGTTCCGGTTGCATGGCCAGTTCAGTTGGGTTTGTGGGCGGTCACCT
TGGCTAGCCTGAGTGGCTCTTGCCTG
dot-bracket secondary structure
.((((((((((...(((.(((((((((((.(((((.(((((((.((((.(((((.......))))).)))).(..(....)..).)))))))))))))))
))))).))).))).))))))))))..
SIMILARITIES| miRBase sbi-MIR169d: 4e-44 PMRD sbi-miR169c: 2e-67 microPC miR169: 0.000006 | UniProt no hits RFAM MIR169_5: 4e-66 |
Identical with: sbi-miR169c from PMRD (MNEST054439) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
