ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR169
source: miRBase, original name: sbi-MIR169k (MI0010876)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGG miRNA* GGCAAGTCTGTCCTTGGCTACA mismatches: 1 bulges: 1 |
pre-miRNA
ACAGCCAAGGATGACTTGCCGGCTCCTCAAATTTGAAGCGTCGTCTAAGCTGCTGAGGCTTAATAAAAACTTAGTCGGCAAGTCTGTCCTTGGCTACA
dot-bracket secondary structure
).((((((((((((((((((((((...........((((.(((.(......).))).))))...........)))))))))))).))))))))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
ACAGCCAAGGATGACTTGCCGGCTCCTCAAATTTGAAGCGTCGTCTAAGCTGCTGAGGCTTAATAAAAACTTAGTCGGCAAGTCTGTCCTTGGCTACA
dot-bracket secondary structure
).((((((((((((((((((((((...........((((.(((.(......).))).))))...........)))))))))))).))))))))))...
SIMILARITIES| miRBase zma-MIR169c: 8.0E-11 PMRD sbi-miR169k: 3.0E-50 microPC miR169: 7.0E-8 | UniProt no hits RFAM 2MIR169_2: 6.0E-49 |
Identical with: sbi-miR169k from PMRD (MNEST054447) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
