ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR171_2
source: miRBase, original name: sbi-MIR171c (MI0001567)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGGTGAGCCGAGCCAATATC miRNA* TATTGACTTGGCTCATCTCTC mismatches: 1 bulges: 0 |
pre-miRNA
AGAACGAGACGACATGGCATGGTATTGACTTGGCTCATCTCTCATCCACAGCAAACTTCACAAGTGCCTGAGGTGAGCCGAGCCAATATCACTTCATGTC
ATCTAGCGT
dot-bracket secondary structure
...((((((.(((((((..((((((((.(((((((((((((.....(((..............)))...))))))))))))).))))))))..)))))))
.)))..)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
AGAACGAGACGACATGGCATGGTATTGACTTGGCTCATCTCTCATCCACAGCAAACTTCACAAGTGCCTGAGGTGAGCCGAGCCAATATCACTTCATGTC
ATCTAGCGT
dot-bracket secondary structure
...((((((.(((((((..((((((((.(((((((((((((.....(((..............)))...))))))))))))).))))))))..)))))))
.)))..)))
SIMILARITIES| miRBase zma-MIR171g: 1e-31 PMRD sbi-miR171c: 3e-57 microPC no hits | UniProt no hits RFAM MIR171_2: 4e-56 |
Identical with: sbi-miR171c from PMRD (MNEST054454) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
