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Species belonging to selected taxon:

Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042553
species: Sorghum bicolor
miRNA family: MIR171
source: miRBase, original name: sbi-MIR171h (MI0010881)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGATTGAGCCGCGTCAATATC

miRNA*
TATTGGCGCGCCTCAATCCGA

mismatches: 1
bulges: 0

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pre-miRNA
GGTATTGGCGCGCCTCAATCCGAAGGCGTGGCTGATTTGGCATGGCAGCCATGTTCTTGGATTGAGCCGCGTCAATATCTC

dot-bracket secondary structure
((((((((((((.((((((((((..(((((((((...........)))))))))..)))))))))).))))))))))))..


SIMILARITIES
miRBase zma-MIR171m: 3e-28

PMRD sbi-miR171h: 9e-41

microPC miR171: 0.000000001
UniProt no hits

RFAM MIR171_1: 2e-39

Identical with: sbi-miR171h from PMRD (MNEST054459)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"




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