ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR171
source: miRBase, original name: sbi-MIR171j (MI0010883)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGCGCCAATATC miRNA* TATTGGTGAGGTTCAATCAGA mismatches: 1 bulges: 0 |
pre-miRNA
CGCGAGCGATATTGGTGAGGTTCAATCAGATCATCAGATGATGTATTTTAAATTTACATGCATGAAGGTGAATCCCCAGGGACTGATTGAGCCGCGCCAAT
ATCACTTC
dot-bracket secondary structure
)..(((.((((((((((.(((((((((((.(((((..((((((((.........))))).)))...))))).(((....)))))))))))))).)))))))
))).))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
CGCGAGCGATATTGGTGAGGTTCAATCAGATCATCAGATGATGTATTTTAAATTTACATGCATGAAGGTGAATCCCCAGGGACTGATTGAGCCGCGCCAAT
ATCACTTC
dot-bracket secondary structure
)..(((.((((((((((.(((((((((((.(((((..((((((((.........))))).)))...))))).(((....)))))))))))))).)))))))
))).))).
SIMILARITIES| miRBase vvi-MIR171e: 8.0E-8 PMRD sbi-miR171j: 1.0E-56 microPC miR171: 5.0E-6 | UniProt no hits RFAM 1MIR171_1: 2.0E-55 |
Identical with: sbi-miR171j from PMRD (MNEST054461) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
