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Species belonging to selected taxon:

Sorghum propinquum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042555
species: Sorghum bicolor
miRNA family: MIR171
source: miRBase, original name: sbi-MIR171j (MI0010883)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGATTGAGCCGCGCCAATATC

miRNA*
TATTGGTGAGGTTCAATCAGA

mismatches: 1
bulges: 0

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pre-miRNA
GCGAGCGATATTGGTGAGGTTCAATCAGATCATCAGATGATGTATTTTAAATTTACATGCATGAAGGTGAATCCCCAGGGACTGATTGAGCCGCGCCAAT
ATC
ACTTC


dot-bracket secondary structure
..(((.((((((((((.(((((((((((.(((((..((((((((.........))))).)))...))))).(((....)))))))))))))).)))))))
)))
.))).



SIMILARITIES
miRBase vvi-MIR171e: 0.00000008

PMRD sbi-miR171j: 1e-56

microPC miR171: 0.000005
UniProt no hits

RFAM MIR171_1: 2e-55

Identical with: sbi-miR171j from PMRD (MNEST054461)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"




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