ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR172
source: miRBase, original name: sbi-MIR172e (MI0001568)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAATCTTGATGATGCTGCAC miRNA* GCAGCAGCATCAAGGTTCGCC mismatches: 1 bulges: 0 |
pre-miRNA
TCGGAGCCGACTCTCTGCAGGTGCAGCAGCATCAAGGTTCGCCAGCAGCAAGCGATCGATCGAGGCGTGTGTGTGTGAATCTTGATGATGCTGCACCAGC
AATGAGCCGGCCGGC
dot-bracket secondary structure
.(.(.((((.(((..(((.(((((((((.((((((((((((((((((((...(((....)))..)).))).)).))))))))))))).))))))))).))
)..))).))))).).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
TCGGAGCCGACTCTCTGCAGGTGCAGCAGCATCAAGGTTCGCCAGCAGCAAGCGATCGATCGAGGCGTGTGTGTGTGAATCTTGATGATGCTGCACCAGC
AATGAGCCGGCCGGC
dot-bracket secondary structure
.(.(.((((.(((..(((.(((((((((.((((((((((((((((((((...(((....)))..)).))).)).))))))))))))).))))))))).))
)..))).))))).).
SIMILARITIES| miRBase osa-MIR172c: 0.000000006 PMRD sbi-miR172e: 7e-61 microPC miR172: 0.00002 | UniProt no hits RFAM mir-172: 3e-48 |
Identical with: sbi-miR172e from PMRD (MNEST054467) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
