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Species belonging to selected taxon:

Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042561
species: Sorghum bicolor
miRNA family: MIR172
source: miRBase, original name: sbi-MIR172e (MI0001568)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAATCTTGATGATGCTGCAC

miRNA*
GCAGCAGCATCAAGGTTCGCC

mismatches: 1
bulges: 0

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pre-miRNA
TCGGAGCCGACTCTCTGCAGGTGCAGCAGCATCAAGGTTCGCCAGCAGCAAGCGATCGATCGAGGCGTGTGTGTGTGAATCTTGATGATGCTGCACCAGC
AATGAGCCGGCCGGC


dot-bracket secondary structure
.(.(.((((.(((..(((.(((((((((.((((((((((((((((((((...(((....)))..)).))).)).))))))))))))).))))))))).))
)..))).))))).).



SIMILARITIES
miRBase osa-MIR172c: 0.000000006

PMRD sbi-miR172e: 7e-61

microPC miR172: 0.00002
UniProt no hits

RFAM mir-172: 3e-48

Identical with: sbi-miR172e from PMRD (MNEST054467)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"




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