ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR172
source: miRBase, original name: sbi-MIR172f (MI0013256)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCCTGATGATGCTGCAC miRNA* GCGGCATCATCAGGATTCACA mismatches: 3 bulges: 0 |
pre-miRNA
GCGGCATCATCAGGATTCACACCGGGTAAACACCGTTGGGTGGGTGCAGTTACCCATGCACATATATGCAGGTCTGGCTCTATCTGTTGCTTGCGTGAGA
ATCCTGATGATGCTGCAC
dot-bracket secondary structure
((((((((((((((((((.(((((((((..((((....)))).(((((........)))))......((((((........)))))))))))).))).))
))))))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
GCGGCATCATCAGGATTCACACCGGGTAAACACCGTTGGGTGGGTGCAGTTACCCATGCACATATATGCAGGTCTGGCTCTATCTGTTGCTTGCGTGAGA
ATCCTGATGATGCTGCAC
dot-bracket secondary structure
((((((((((((((((((.(((((((((..((((....)))).(((((........)))))......((((((........)))))))))))).))).))
))))))))))))))))..
SIMILARITIES| miRBase tcc-MIR172d: 0.00002 PMRD psi-miR172: 0.000001 microPC miR172: 0.00009 | UniProt no hits RFAM mir-172: 2e-61 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
