ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR390
source: miRBase, original name: sbi-MIR390 (MI0010887)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTCAGGAGGGATAGCGCC miRNA* CGCTATCTATCCTGAGCTCCA mismatches: 3 bulges: 0 |
pre-miRNA
TGAAGCTCAGGAGGGATAGCGCCTAGGAAAACACATAGATTGGAGCTAGCCATGAGGAGAAAGAGAGAGAGAGGCAGCAGAGCGAGATGCATGTGAATCT
CTGAATCTGCTCATCTCTTTCTCTTTCTCAAGGTTGGTTCTGTCTATCAATCTGAAGCGCTATCTATCCTGAGCTCCAC
dot-bracket secondary structure
((.(((((((((.(((((((((...(((......((((((.((((((((((.....((((((((((((((((.(.((((((..(((((........))))
)....))))))).))))))))))))))))..))))))))))))))))...)))...))))))))).))))))))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Ware D, Unpublished (2009).,
TGAAGCTCAGGAGGGATAGCGCCTAGGAAAACACATAGATTGGAGCTAGCCATGAGGAGAAAGAGAGAGAGAGGCAGCAGAGCGAGATGCATGTGAATCT
CTGAATCTGCTCATCTCTTTCTCTTTCTCAAGGTTGGTTCTGTCTATCAATCTGAAGCGCTATCTATCCTGAGCTCCAC
dot-bracket secondary structure
((.(((((((((.(((((((((...(((......((((((.((((((((((.....((((((((((((((((.(.((((((..(((((........))))
)....))))))).))))))))))))))))..))))))))))))))))...)))...))))))))).))))))))).)).
SIMILARITIES| miRBase zma-MIR390a: 7e-19 PMRD zma-miR390: 4e-17 microPC miR390: 0.00004 | UniProt no hits RFAM MIR390: 0.00004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Ware D, Unpublished (2009).,
