miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042565
species: Sorghum bicolor
miRNA family: MIR390
source: miRBase, original name: sbi-MIR390 (MI0010887)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AAGCTCAGGAGGGATAGCGCC

miRNA*
 CGCTATCTATCCTGAGCTCCA

mismatches: 3
bulges: 0
View larger
pre-miRNA
 TGAAGCTCAGGAGGGATAGCGCCTAGGAAAACACATAGATTGGAGCTAGCCATGAGGAGAAAGAGAGAGAGAGGCAGCAGAGCGAGATGCATGTGAATCT
CTGAATCTGCTCATCTCTTTCTCTTTCTCAAGGTTGGTTCTGTCTATCAATCTGAAGCGCTATCTATCCTGAGCTCCAC

dot-bracket secondary structure
((.(((((((((.(((((((((...(((......((((((.((((((((((.....((((((((((((((((.(.((((((..(((((........))))
)....))))))).))))))))))))))))..))))))))))))))))...)))...))))))))).))))))))).)).


SIMILARITIES
miRBase zma-MIR390a: 7e-19

PMRD zma-miR390: 4e-17

microPC miR390: 0.00004		UniProt no hits

RFAM MIR390: 0.00004

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references
[1] Zhang L, Ware D, Unpublished (2009).,



Liczniki na strone;