ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR393
source: miRBase, original name: sbi-MIR393b (MI0010888)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCAAAGGGATCGCATTGATC miRNA* TCAGTGCAATCCCTTTGGAA mismatches: 1 bulges: 0 |
pre-miRNA
TCCAAAGGGATCGCATTGATCTCACCTGCCGCCCGCCGCTGCGCCTGCGCGCGAGGGGACAAGATCAGTGCAATCCCTTTGGAA
dot-bracket secondary structure
(((((((((((.((((((((((....((((.((((((((.......))).))).)))).)))))))))))).))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
TCCAAAGGGATCGCATTGATCTCACCTGCCGCCCGCCGCTGCGCCTGCGCGCGAGGGGACAAGATCAGTGCAATCCCTTTGGAA
dot-bracket secondary structure
(((((((((((.((((((((((....((((.((((((((.......))).))).)))).)))))))))))).))))))))))).
SIMILARITIES| miRBase zma-MIR393c: 0.00000002 PMRD zma-miR393e: 0.00000002 microPC miR393: 0.00002 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
