ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR395
source: miRBase, original name: sbi-MIR395f (MI0001855)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGAAGTGTTTGGGGGAACTC miRNA* GTTCCCTTCAAGCACTTCATGA mismatches: 0 bulges: 1 |
pre-miRNA
ACAATGTTTGGTGTTACCACGAGTTCCCTTCAAGCACTTCATGAGGCACCATTAAATAACTCTATTTAAGATTAGGTGTAATATGAAGTGTTTGGGGGAA
CTCTTGGTGATACTCAACATCG
dot-bracket secondary structure
...(((((.((((((((((.(((((((((.(((((((((((((..(((((.(((((((....))))))).....)))))..)))))))))))))))))))
))).)))))))))).)))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
ACAATGTTTGGTGTTACCACGAGTTCCCTTCAAGCACTTCATGAGGCACCATTAAATAACTCTATTTAAGATTAGGTGTAATATGAAGTGTTTGGGGGAA
CTCTTGGTGATACTCAACATCG
dot-bracket secondary structure
...(((((.((((((((((.(((((((((.(((((((((((((..(((((.(((((((....))))))).....)))))..)))))))))))))))))))
))).)))))))))).)))))..
SIMILARITIES| miRBase sbi-MIR395h: 2e-21 PMRD sbi-miR395f: 5e-65 microPC miR395: 0.00002 | UniProt no hits RFAM mir-395: 2e-52 |
Identical with: sbi-miR395f from PMRD (MNEST054478) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
