ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR395
source: miRBase, original name: sbi-MIR395k (MI0010895)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGAAGTGTTTGGAGGAACTC miRNA* GTTCCCTTCAAGCACTTCACAT mismatches: 2 bulges: 1 |
pre-miRNA
GTTCCCTTCAAGCACTTCACATGAAGCTTCACATTGGCAGATGTAGTCTTGAGACCAATGTGAAGTGTTTGGAGGAACTC
dot-bracket secondary structure
(((((.((((((((((((((((...(((.......))).......(((....)))..)))))))))))))))))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
GTTCCCTTCAAGCACTTCACATGAAGCTTCACATTGGCAGATGTAGTCTTGAGACCAATGTGAAGTGTTTGGAGGAACTC
dot-bracket secondary structure
(((((.((((((((((((((((...(((.......))).......(((....)))..)))))))))))))))))))))..
SIMILARITIES| miRBase zma-MIR395m: 3e-16 PMRD sbi-miR395k: 4e-40 microPC miR395: 0.0009 | UniProt no hits RFAM mir-395: 6e-39 |
Identical with: sbi-miR395k from PMRD (MNEST054483) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
