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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042581
species: Sorghum bicolor
miRNA family: MIR395
source: miRBase, original name: sbi-MIR395l (MI0010896)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GTGAAGTGCTTGGGGGAACTC

miRNA*
 GTTCCCTTCAAGCACTTCACAT

mismatches: 2
bulges: 1
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pre-miRNA
 GTTCCCTTCAAGCACTTCACATGGAGCATTATTTGTCTTGGAGAAAGCTTAATTTGATGCATTGTGAAGTGCTTGGGGGAACTC

dot-bracket secondary structure
(((((((.(((((((((((((....((((((.(((.(((.....)))..)))..))))))..))))))))))))))))))))..


SIMILARITIES
miRBase zma-MIR395k: 7e-17

PMRD sbi-miR395l: 2e-42

microPC no hits		UniProt no hits

RFAM mir-395: 3e-41

Identical with: sbi-miR395l from PMRD (MNEST054484)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"



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