ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR399
source: miRBase, original name: sbi-MIR399a (MI0001541)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAATTGCCCTG miRNA* GGGCAGTTCGTCTTTGGCACA mismatches: 2 bulges: 0 |
pre-miRNA
TGCCGGCGCCGGCGAATTACGGGGCAGTTCGTCTTTGGCACAAAGGCACGTCCAGAACTACTCGATGAGGGTCACTTGAGCTGAACTGAACATGCGTGCC
AAAGGAGAATTGCCCTGCGATTCGCCCGTGCAGAAG
dot-bracket secondary structure
.....((((.(((((((..(((((((((((..(((((((((....(((.((.(((..(..(((((((.....)).)))))..)..))).)).))))))))
))))..)))))))))))..))))))).)))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
TGCCGGCGCCGGCGAATTACGGGGCAGTTCGTCTTTGGCACAAAGGCACGTCCAGAACTACTCGATGAGGGTCACTTGAGCTGAACTGAACATGCGTGCC
AAAGGAGAATTGCCCTGCGATTCGCCCGTGCAGAAG
dot-bracket secondary structure
.....((((.(((((((..(((((((((((..(((((((((....(((.((.(((..(..(((((((.....)).)))))..)..))).)).))))))))
))))..)))))))))))..))))))).)))).....
SIMILARITIES| miRBase osa-MIR399c: 0.000000000007 PMRD sbi-miR399a: 9e-70 microPC miR399: 0.0000004 | UniProt no hits RFAM mir-399: 2e-61 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
