ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR399
source: miRBase, original name: sbi-MIR399d (MI0001543)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAGTTGCCCTG miRNA* GGCAGCTCTCCTCTGGCAGG mismatches: 1 bulges: 1 |
pre-miRNA
GTGCAGGCTGAAGACAGTTGTAGGCAGCTCTCCTCTGGCAGGCGGTCATCGTCGTCGTCATCGACGGCTGGTTCTGTGTTCATCCGGATCCATCGTGCAG
CCGTGCATGCATGCAGTAATATTCGGTTACATGCATGCATTATGCACGCACGTACGTCGTCGTCCTGCCAAAGGAGAGTTGCCCTGCGACTGTCTCCAGC
TTCCT
dot-bracket secondary structure
..(.((((((.(((((((((((((((((((((((.((((((((((.(...(((((((....))))))).((.((((........)))).))..(((((..
.(((((((((((((((((((.....))))).))))))))...))))))...)))))..)))).))))))).)))))))))).))))))))))))).))))
)).).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
GTGCAGGCTGAAGACAGTTGTAGGCAGCTCTCCTCTGGCAGGCGGTCATCGTCGTCGTCATCGACGGCTGGTTCTGTGTTCATCCGGATCCATCGTGCAG
CCGTGCATGCATGCAGTAATATTCGGTTACATGCATGCATTATGCACGCACGTACGTCGTCGTCCTGCCAAAGGAGAGTTGCCCTGCGACTGTCTCCAGC
TTCCT
dot-bracket secondary structure
..(.((((((.(((((((((((((((((((((((.((((((((((.(...(((((((....))))))).((.((((........)))).))..(((((..
.(((((((((((((((((((.....))))).))))))))...))))))...)))))..)))).))))))).)))))))))).))))))))))))).))))
)).).
SIMILARITIES| miRBase osa-MIR399d: 0.00000000004 PMRD sbi-miR399d: 3e-114 microPC miR399: 0.0002 | UniProt no hits RFAM mir-399: 0.0008 |
Identical with: sbi-miR399d from PMRD (MNEST054492) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
