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Species belonging to selected taxon:

Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042593
species: Sorghum bicolor
miRNA family: MIR399
source: miRBase, original name: sbi-MIR399e (MI0001544)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCAAAGGAGATTTGCCCAG

miRNA*
GGGTGGGTCTCCTCTGGCAGT

mismatches: 4
bulges: 0

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pre-miRNA
ACATGCGGGGCCATGCATTACCGGGTGGGTCTCCTCTGGCAGTAACTTGGCTGGTCGCCTGGTCCATGATACCTGCGTGCAGACACTGCCAAAGGAGATT
TGCCCAG
CAATGCAGTTTTGAGTCCC


dot-bracket secondary structure
......(((((((((((((.(.(((..((((((((.(((((((.(((.(((.....))).))).........(((....)))..))))))).))))))))
..))).)
.))))))....)).)))))



SIMILARITIES
miRBase osa-MIR399e: 0.000000002

PMRD sbi-miR399e: 2e-67

microPC miR399: 0.00002
UniProt no hits

RFAM mir-399: 8e-55

Identical with: sbi-miR399e from PMRD (MNEST054493)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"




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