ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR399
source: miRBase, original name: sbi-MIR399f (MI0001545)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGATTTGCCCAG miRNA* GGGCCATTTCTCCTTGGGCAGA mismatches: 4 bulges: 1 |
pre-miRNA
CATATGCGAGTCGAGGATTACCGGGCCATTTCTCCTTGGGCAGAGTAATTGAATTTTACTTTGCTGGATCCGGTTTGCTCTGCCAAAGGAGATTTGCCCA
GCAATCCACATTTGTAATAT
dot-bracket secondary structure
....(((((((.(.(((((.(.((((.(..(((((((.((((((((((..............((((....)))))))))))))).)))))))..))))).
).))))).))))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
CATATGCGAGTCGAGGATTACCGGGCCATTTCTCCTTGGGCAGAGTAATTGAATTTTACTTTGCTGGATCCGGTTTGCTCTGCCAAAGGAGATTTGCCCA
GCAATCCACATTTGTAATAT
dot-bracket secondary structure
....(((((((.(.(((((.(.((((.(..(((((((.((((((((((..............((((....)))))))))))))).)))))))..))))).
).))))).))))))))....
SIMILARITIES| miRBase osa-MIR399f: 0.000000000002 PMRD sbi-miR399f: 8e-64 microPC miR399: 0.000006 | UniProt no hits RFAM mir-399: 3e-51 |
Identical with: sbi-miR399f from PMRD (MNEST054494) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
