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Species belonging to selected taxon:

Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042595
species: Sorghum bicolor
miRNA family: MIR399
source: miRBase, original name: sbi-MIR399g (MI0001547)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCAAAGGAAATTTGCCCCG

miRNA*
GGGCAACTTCTCCTTTGGCAGA

mismatches: 2
bulges: 1

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pre-miRNA
CCAGATGTGCACTTGCATTGCTGGGCAACTTCTCCTTTGGCAGATGCGCAATGTGCTCCGACCCTGGGGCTTCTTCCGCGCCTACTGCCAAAGGAAATTT
GCCCCG
GAATTCACCTGCACAGCCA


dot-bracket secondary structure
.....((((((..((.(((.(.((((((.((.(((((((((((..((((.....((((((....)))))).......))))...))))))))))))).))
)))).)
.))).))..))))))....



SIMILARITIES
miRBase zma-MIR399f: 0.000000000000007

PMRD sbi-miR399g: 2e-61

microPC no hits
UniProt no hits

RFAM mir-399: 3e-54

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"




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