ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR399
source: miRBase, original name: sbi-MIR399g (MI0001547)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAAATTTGCCCCG miRNA* GGGCAACTTCTCCTTTGGCAGA mismatches: 2 bulges: 1 |
pre-miRNA
CCAGATGTGCACTTGCATTGCTGGGCAACTTCTCCTTTGGCAGATGCGCAATGTGCTCCGACCCTGGGGCTTCTTCCGCGCCTACTGCCAAAGGAAATTT
GCCCCGGAATTCACCTGCACAGCCA
dot-bracket secondary structure
.....((((((..((.(((.(.((((((.((.(((((((((((..((((.....((((((....)))))).......))))...))))))))))))).))
)))).).))).))..))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
CCAGATGTGCACTTGCATTGCTGGGCAACTTCTCCTTTGGCAGATGCGCAATGTGCTCCGACCCTGGGGCTTCTTCCGCGCCTACTGCCAAAGGAAATTT
GCCCCGGAATTCACCTGCACAGCCA
dot-bracket secondary structure
.....((((((..((.(((.(.((((((.((.(((((((((((..((((.....((((((....)))))).......))))...))))))))))))).))
)))).).))).))..))))))....
SIMILARITIES| miRBase zma-MIR399f: 0.000000000000007 PMRD sbi-miR399g: 2e-61 microPC no hits | UniProt no hits RFAM mir-399: 3e-54 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
