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Species belonging to selected taxon:

Sorghum propinquum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042596
species: Sorghum bicolor
miRNA family: MIR399
source: miRBase, original name: sbi-MIR399h (MI0001849)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCAAAGGAGAATTGCCCTG

miRNA*
GTGCGGTTCTCCTCTGGCATG

mismatches: 2
bulges: 0

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pre-miRNA
AGTGTTCAGGGTAAGAATCACAGTGCGGTTCTCCTCTGGCATGGAGGCCAACATAGCAGGCATTGGAGAATGCACAGCGCTATCGCCATCCCTGCCAAAG
GAGAATTGCCCTG
CCATTCGGTATAACCCTGG


dot-bracket secondary structure
......((((((..((((..(((.(((((((((((.(((((.((((((....(((((..(((((....))))).....))))).))).))).))))).))
))))))))).)))
..))))......)))))).



SIMILARITIES
miRBase zma-MIR399a: 0.0000000004

PMRD sbi-miR399h: 6e-71

microPC miR399: 0.00003
UniProt no hits

RFAM mir-399: 2e-58

Identical with: sbi-miR399h from PMRD (MNEST054496)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"




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